diff --git a/aux/btest b/aux/btest
index c3a65f1306..4e2ec35917 160000
--- a/aux/btest
+++ b/aux/btest
@@ -1 +1 @@
-Subproject commit c3a65f13063291ffcfd6d05c09d7724c02e9a40d
+Subproject commit 4e2ec35917acb883c7d2ab19af487f3863c687ae
diff --git a/src/Conn.cc b/src/Conn.cc
index 0098d297e0..fa89f26d35 100644
--- a/src/Conn.cc
+++ b/src/Conn.cc
@@ -15,6 +15,7 @@
 #include "binpac.h"
 #include "TunnelEncapsulation.h"
 #include "analyzer/Analyzer.h"
+#include "analyzer/Manager.h"
 
 void ConnectionTimer::Init(Connection* arg_conn, timer_func arg_timer,
 				int arg_do_expire)
@@ -722,8 +723,8 @@ TimerMgr* Connection::GetTimerMgr() const
 void Connection::FlipRoles()
 	{
 	IPAddr tmp_addr = resp_addr;
-	orig_addr = resp_addr;
-	resp_addr = tmp_addr;
+	resp_addr = orig_addr;
+	orig_addr = tmp_addr;
 
 	uint32 tmp_port = resp_port;
 	resp_port = orig_port;
@@ -742,6 +743,8 @@ void Connection::FlipRoles()
 
 	if ( root_analyzer )
 		root_analyzer->FlipRoles();
+
+	analyzer_mgr->ApplyScheduledAnalyzers(this);
 	}
 
 unsigned int Connection::MemoryAllocation() const
diff --git a/src/analyzer/Manager.cc b/src/analyzer/Manager.cc
index 6268fde177..56b838b5b3 100644
--- a/src/analyzer/Manager.cc
+++ b/src/analyzer/Manager.cc
@@ -636,3 +636,25 @@ Manager::tag_set Manager::GetScheduled(const Connection* conn)
 	// eventually.
 	return result;
 	}
+
+void Manager::ApplyScheduledAnalyzers(Connection* conn)
+	{
+	TransportLayerAnalyzer* root = conn->GetRootAnalyzer();
+
+	if ( ! root )
+		return;
+
+	tag_set expected = GetScheduled(conn);
+
+	for ( tag_set::iterator it = expected.begin(); it != expected.end(); ++it )
+		{
+		Analyzer* analyzer = analyzer_mgr->InstantiateAnalyzer(*it, conn);
+
+		if ( ! analyzer )
+			continue;
+
+		root->AddChildAnalyzer(analyzer, true);
+		DBG_ANALYZER_ARGS(conn, "activated %s analyzer as scheduled",
+		                  analyzer_mgr->GetComponentName(*it));
+		}
+	}
diff --git a/src/analyzer/Manager.h b/src/analyzer/Manager.h
index 77b40a1d68..82ace5bd98 100644
--- a/src/analyzer/Manager.h
+++ b/src/analyzer/Manager.h
@@ -292,6 +292,14 @@ public:
 				TransportProto proto, const char* analyzer,
 				double timeout);
 
+	/**
+	 * Searched for analyzers scheduled to be attached to a given connection
+	 * and then attaches them.
+	 *
+	 * @param conn The connection to which scheduled analyzers are attached.
+	 */
+	void ApplyScheduledAnalyzers(Connection* conn);
+
 	/**
 	 * Schedules a particular analyzer for an upcoming connection. Once
 	 * the connection is seen, BuildInitAnalyzerTree() will add the
diff --git a/src/analyzer/protocol/pia/PIA.cc b/src/analyzer/protocol/pia/PIA.cc
index ab2d1833e8..388d1d501d 100644
--- a/src/analyzer/protocol/pia/PIA.cc
+++ b/src/analyzer/protocol/pia/PIA.cc
@@ -331,11 +331,11 @@ void PIA_TCP::ActivateAnalyzer(analyzer::Tag tag, const Rule* rule)
 
 	tcp::TCP_Reassembler* reass_orig =
 		new tcp::TCP_Reassembler(this, tcp, tcp::TCP_Reassembler::Direct,
-					true, tcp->Orig());
+					tcp->Orig());
 
 	tcp::TCP_Reassembler* reass_resp =
 		new tcp::TCP_Reassembler(this, tcp, tcp::TCP_Reassembler::Direct,
-					false, tcp->Resp());
+					tcp->Resp());
 
 	int orig_seq = 0;
 	int resp_seq = 0;
diff --git a/src/analyzer/protocol/tcp/TCP.cc b/src/analyzer/protocol/tcp/TCP.cc
index 57c4ebef18..c422d01f32 100644
--- a/src/analyzer/protocol/tcp/TCP.cc
+++ b/src/analyzer/protocol/tcp/TCP.cc
@@ -95,9 +95,9 @@ void TCP_Analyzer::Done()
 void TCP_Analyzer::EnableReassembly()
 	{
 	SetReassembler(new TCP_Reassembler(this, this,
-					TCP_Reassembler::Forward, true, orig),
-		       new TCP_Reassembler(this, this,
-					TCP_Reassembler::Forward, false, resp));
+	                                   TCP_Reassembler::Forward, orig),
+	               new TCP_Reassembler(this, this,
+	                                   TCP_Reassembler::Forward, resp));
 
 	reassembling = 1;
 
@@ -590,6 +590,7 @@ void TCP_Analyzer::UpdateInactiveState(double t,
 				// per the discussion in IsReuse.
 				// Flip the endpoints and establish
 				// the connection.
+				is_partial = 0;
 				Conn()->FlipRoles();
 				peer->SetState(TCP_ENDPOINT_ESTABLISHED);
 				}
diff --git a/src/analyzer/protocol/tcp/TCP_Reassembler.cc b/src/analyzer/protocol/tcp/TCP_Reassembler.cc
index 49292a04a5..da8dd857fd 100644
--- a/src/analyzer/protocol/tcp/TCP_Reassembler.cc
+++ b/src/analyzer/protocol/tcp/TCP_Reassembler.cc
@@ -32,13 +32,12 @@ static uint64 last_gap_bytes = 0;
 TCP_Reassembler::TCP_Reassembler(analyzer::Analyzer* arg_dst_analyzer,
 				TCP_Analyzer* arg_tcp_analyzer,
 				TCP_Reassembler::Type arg_type,
-				bool arg_is_orig, TCP_Endpoint* arg_endp)
+				TCP_Endpoint* arg_endp)
 	: Reassembler(1, REASSEM_TCP)
 	{
 	dst_analyzer = arg_dst_analyzer;
 	tcp_analyzer = arg_tcp_analyzer;
 	type = arg_type;
-	is_orig = arg_is_orig;
 	endp = arg_endp;
 	had_gap = false;
 	record_contents_file = 0;
@@ -165,10 +164,10 @@ void TCP_Reassembler::Undelivered(int up_to_seq)
 
 	if ( DEBUG_tcp_contents )
 		{
-		DEBUG_MSG("%.6f Undelivered: is_orig=%d up_to_seq=%d, last_reassm=%d, "
+		DEBUG_MSG("%.6f Undelivered: IsOrig()=%d up_to_seq=%d, last_reassm=%d, "
 		          "endp: FIN_cnt=%d, RST_cnt=%d, "
 		          "peer: FIN_cnt=%d, RST_cnt=%d\n",
-		          network_time, is_orig, up_to_seq, last_reassem_seq,
+		          network_time, IsOrig(), up_to_seq, last_reassem_seq,
 		          endpoint->FIN_cnt, endpoint->RST_cnt,
 		          peer->FIN_cnt, peer->RST_cnt);
 		}
@@ -196,9 +195,9 @@ void TCP_Reassembler::Undelivered(int up_to_seq)
 		{
 		if ( DEBUG_tcp_contents )
 			{
-			DEBUG_MSG("%.6f Undelivered: is_orig=%d, seq=%d, len=%d, "
+			DEBUG_MSG("%.6f Undelivered: IsOrig()=%d, seq=%d, len=%d, "
 					  "skip_deliveries=%d\n",
-					  network_time, is_orig, last_reassem_seq,
+					  network_time, IsOrig(), last_reassem_seq,
 					  seq_delta(up_to_seq, last_reassem_seq),
 					  skip_deliveries);
 			}
@@ -229,7 +228,7 @@ void TCP_Reassembler::Undelivered(int up_to_seq)
 				{
 				val_list* vl = new val_list;
 				vl->append(dst_analyzer->BuildConnVal());
-				vl->append(new Val(is_orig, TYPE_BOOL));
+				vl->append(new Val(IsOrig(), TYPE_BOOL));
 				vl->append(new Val(seq, TYPE_COUNT));
 				vl->append(new Val(len, TYPE_COUNT));
 
@@ -238,11 +237,11 @@ void TCP_Reassembler::Undelivered(int up_to_seq)
 
 			if ( type == Direct )
 				dst_analyzer->NextUndelivered(last_reassem_seq,
-								len, is_orig);
+								len, IsOrig());
 			else
 				{
 				dst_analyzer->ForwardUndelivered(last_reassem_seq,
-								len, is_orig);
+								len, IsOrig());
 				}
 			}
 
@@ -289,7 +288,7 @@ void TCP_Reassembler::MatchUndelivered(int up_to_seq)
 	for ( b = blocks; b && seq_delta(b->upper, last_reassem_seq) <= 0;
 	      b = b->next )
 	      tcp_analyzer->Conn()->Match(Rule::PAYLOAD, b->block, b->Size(),
-						false, false, is_orig, false);
+						false, false, IsOrig(), false);
 
 	ASSERT(b);
 	}
@@ -410,7 +409,7 @@ void TCP_Reassembler::BlockInserted(DataBlock* start_block)
 void TCP_Reassembler::Overlap(const u_char* b1, const u_char* b2, int n)
 	{
 	if ( DEBUG_tcp_contents )
-		DEBUG_MSG("%.6f TCP contents overlap: %d is_orig=%d\n", network_time,  n, is_orig);
+		DEBUG_MSG("%.6f TCP contents overlap: %d IsOrig()=%d\n", network_time,  n, IsOrig());
 
 	if ( rexmit_inconsistency &&
 	     memcmp((const void*) b1, (const void*) b2, n) &&
@@ -442,9 +441,9 @@ bool TCP_Reassembler::DoUnserialize(UnserialInfo* info)
 void TCP_Reassembler::Deliver(int seq, int len, const u_char* data)
 	{
 	if ( type == Direct )
-		dst_analyzer->NextStream(len, data, is_orig);
+		dst_analyzer->NextStream(len, data, IsOrig());
 	else
-		dst_analyzer->ForwardStream(len, data, is_orig);
+		dst_analyzer->ForwardStream(len, data, IsOrig());
 	}
 
 int TCP_Reassembler::DataSent(double t, int seq, int len,
@@ -455,8 +454,8 @@ int TCP_Reassembler::DataSent(double t, int seq, int len,
 
 	if ( DEBUG_tcp_contents )
 		{
-		DEBUG_MSG("%.6f DataSent: is_orig=%d seq=%d upper=%d ack=%d\n",
-		          network_time, is_orig, seq, upper_seq, ack);
+		DEBUG_MSG("%.6f DataSent: IsOrig()=%d seq=%d upper=%d ack=%d\n",
+		          network_time, IsOrig(), seq, upper_seq, ack);
 		}
 
 	if ( skip_deliveries )
diff --git a/src/analyzer/protocol/tcp/TCP_Reassembler.h b/src/analyzer/protocol/tcp/TCP_Reassembler.h
index 8bb80a0570..e3dcf82a1b 100644
--- a/src/analyzer/protocol/tcp/TCP_Reassembler.h
+++ b/src/analyzer/protocol/tcp/TCP_Reassembler.h
@@ -28,9 +28,8 @@ public:
 		Forward,	// forward to destination analyzer's children
 	};
 
-	TCP_Reassembler(Analyzer* arg_dst_analyzer,
-			TCP_Analyzer* arg_tcp_analyzer, Type arg_type,
-			bool arg_is_orig, TCP_Endpoint* arg_endp);
+	TCP_Reassembler(Analyzer* arg_dst_analyzer, TCP_Analyzer* arg_tcp_analyzer,
+	                Type arg_type, TCP_Endpoint* arg_endp);
 
 	virtual ~TCP_Reassembler();
 
@@ -135,7 +134,6 @@ private:
 	TCP_Analyzer* tcp_analyzer;
 
 	Type type;
-	bool is_orig;
 };
 
 } } // namespace analyzer::* 
diff --git a/testing/btest/Baseline/core.connection_flip_roles/out b/testing/btest/Baseline/core.connection_flip_roles/out
new file mode 100644
index 0000000000..2f596620bf
--- /dev/null
+++ b/testing/btest/Baseline/core.connection_flip_roles/out
@@ -0,0 +1,4 @@
+schedule_analyzer, current conn_id, [orig_h=192.150.187.43, orig_p=80/tcp, resp_h=141.142.228.5, resp_p=59856/tcp]
+http_request, 1.1, GET, /download/CHANGES.bro-aux.txt
+http_reply, 1.1, 200, OK
+connection_state_remove, [orig_h=141.142.228.5, orig_p=59856/tcp, resp_h=192.150.187.43, resp_p=80/tcp]
diff --git a/testing/btest/Traces/tcp/handshake-reorder.trace b/testing/btest/Traces/tcp/handshake-reorder.trace
new file mode 100644
index 0000000000..00581422cb
Binary files /dev/null and b/testing/btest/Traces/tcp/handshake-reorder.trace differ
diff --git a/testing/btest/core/connection_flip_roles.bro b/testing/btest/core/connection_flip_roles.bro
new file mode 100644
index 0000000000..e68d94c5fe
--- /dev/null
+++ b/testing/btest/core/connection_flip_roles.bro
@@ -0,0 +1,39 @@
+# @TEST-EXEC: bro -b -r $TRACES/tcp/handshake-reorder.trace %INPUT >out
+# @TEST-EXEC: btest-diff out
+
+# This tests the Connection::FlipRoles code path (SYN/SYN-ACK reversal).
+
+# The check of likely_server_ports is before Connection::FlipRoles, so
+# need to make sure that isn't the mechanism used to flip src/dst stuff.
+redef likely_server_ports = {};
+
+global first_packet: bool = T;
+
+event new_packet(c: connection, p: pkt_hdr)
+	{
+	if ( ! first_packet )
+		return;
+
+	first_packet = F;
+
+	print "schedule_analyzer, current conn_id", c$id;
+	# Anticipate roles getting flipped in next packet.
+	Analyzer::schedule_analyzer(141.142.228.5, 192.150.187.43, 80/tcp,
+	                            Analyzer::ANALYZER_HTTP, 2mins);
+	}
+
+event connection_state_remove(c: connection)
+	{
+	print "connection_state_remove", c$id;
+	}
+
+event http_request(c: connection, method: string, original_URI: string,
+                   unescaped_URI: string, version: string)
+	{
+	print "http_request", version, method, original_URI;
+	}
+
+event http_reply(c: connection, version: string, code: count, reason: string)
+	{
+	print "http_reply", version, code, reason;
+	}