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migration to using new differentiated methods for setting record fields

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This commit is contained in:
Vern Paxson 2021-02-25 16:59:26 -08:00
parent 4213245633
commit 62bab66114
74 changed files with 982 additions and 988 deletions
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8
src/SmithWaterman.cc
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@ -74,7 +74,7 @@ VectorVal* Substring::VecToPolicy(Vec* vec)
Substring* bst = (*vec)[i];
auto st_val = make_intrusive<RecordVal>(sw_substring_type);
st_val->Assign(0, make_intrusive<StringVal>(new String(*bst)));
st_val->Assign(0, new String(*bst));
auto aligns = make_intrusive<VectorVal>(sw_align_vec_type);
@ -83,14 +83,14 @@ VectorVal* Substring::VecToPolicy(Vec* vec)
const BSSAlign& align = (bst->GetAlignments())[j];
auto align_val = make_intrusive<RecordVal>(sw_align_type);
align_val->Assign(0, make_intrusive<StringVal>(new String(*align.string)));
align_val->Assign(1, val_mgr->Count(align.index));
align_val->Assign(0, new String(*align.string));
align_val->Assign(1, align.index);
aligns->Assign(j, std::move(align_val));
}
st_val->Assign(1, std::move(aligns));
st_val->Assign(2, val_mgr->Bool(bst->IsNewAlignment()));
st_val->Assign(2, bst->IsNewAlignment());
result->Assign(i, std::move(st_val));
}
}