Remove broxygen Sphinx integration

The broxygen-generated files now live in the git repo, have tests
that check that they are up-to-date, and a script to re-generate
them on-demand.

doc/scripts/base/protocols/mysql/__load__.bro.rst

@@ -0,0 +1,14 @@
+:tocdepth: 3
+
+base/protocols/mysql/__load__.bro
+=================================
+
+
+:Imports: :doc:`base/protocols/mysql/main.bro </scripts/base/protocols/mysql/main.bro>`
+
+Summary
+~~~~~~~
+
+Detailed Interface
+~~~~~~~~~~~~~~~~~~
+

doc/scripts/base/protocols/mysql/consts.bro.rst

@@ -0,0 +1,67 @@
+:tocdepth: 3
+
+base/protocols/mysql/consts.bro
+===============================
+.. bro:namespace:: MySQL
+
+
+:Namespace: MySQL
+
+Summary
+~~~~~~~
+Constants
+#########
+============================================================================================================== =
+:bro:id:`MySQL::commands`: :bro:type:`table` :bro:attr:`&default` = :bro:type:`function` :bro:attr:`&optional` 
+============================================================================================================== =
+
+
+Detailed Interface
+~~~~~~~~~~~~~~~~~~
+Constants
+#########
+.. bro:id:: MySQL::commands
+
+   :Type: :bro:type:`table` [:bro:type:`count`] of :bro:type:`string`
+   :Attributes: :bro:attr:`&default` = :bro:type:`function` :bro:attr:`&optional`
+   :Default:
+
+   ::
+
+      {
+         [2] = "init_db",
+         [9] = "statistics",
+         [17] = "change_user",
+         [27] = "set_option",
+         [6] = "drop_db",
+         [11] = "connect",
+         [14] = "ping",
+         [4] = "field_list",
+         [22] = "stmt_prepare",
+         [24] = "stmt_send_long_data",
+         [30] = "binlog_dump_gtid",
+         [1] = "quit",
+         [8] = "shutdown",
+         [7] = "refresh",
+         [15] = "time",
+         [23] = "stmt_execute",
+         [29] = "daemon",
+         [5] = "create_db",
+         [25] = "stmt_close",
+         [19] = "table_dump",
+         [28] = "stmt_fetch",
+         [31] = "reset_connection",
+         [10] = "process_info",
+         [0] = "sleep",
+         [3] = "query",
+         [12] = "process_kill",
+         [13] = "debug",
+         [18] = "binlog_dump",
+         [21] = "register_slave",
+         [16] = "delayed_insert",
+         [20] = "connect_out",
+         [26] = "stmt_reset"
+      }
+
+
+

doc/scripts/base/protocols/mysql/index.rst

@@ -0,0 +1,17 @@
+:orphan:
+
+Package: base/protocols/mysql
+=============================
+
+Support for MySQL protocol analysis.
+
+:doc:`/scripts/base/protocols/mysql/__load__.bro`
+
+
+:doc:`/scripts/base/protocols/mysql/main.bro`
+
+   Implements base functionality for MySQL analysis. Generates the mysql.log file.
+
+:doc:`/scripts/base/protocols/mysql/consts.bro`
+
+

doc/scripts/base/protocols/mysql/main.bro.rst

@@ -0,0 +1,77 @@
+:tocdepth: 3
+
+base/protocols/mysql/main.bro
+=============================
+.. bro:namespace:: MySQL
+
+Implements base functionality for MySQL analysis. Generates the mysql.log file.
+
+:Namespace: MySQL
+:Imports: :doc:`base/protocols/mysql/consts.bro </scripts/base/protocols/mysql/consts.bro>`
+
+Summary
+~~~~~~~
+Types
+#####
+=========================================== =
+:bro:type:`MySQL::Info`: :bro:type:`record` 
+=========================================== =
+
+Redefinitions
+#############
+========================================== =
+:bro:type:`Log::ID`: :bro:type:`enum`      
+:bro:type:`connection`: :bro:type:`record` 
+========================================== =
+
+Events
+######
+============================================= =====================================================================
+:bro:id:`MySQL::log_mysql`: :bro:type:`event` Event that can be handled to access the MySQL record as it is sent on
+                                              to the logging framework.
+============================================= =====================================================================
+
+
+Detailed Interface
+~~~~~~~~~~~~~~~~~~
+Types
+#####
+.. bro:type:: MySQL::Info
+
+   :Type: :bro:type:`record`
+
+      ts: :bro:type:`time` :bro:attr:`&log`
+         Timestamp for when the event happened.
+
+      uid: :bro:type:`string` :bro:attr:`&log`
+         Unique ID for the connection.
+
+      id: :bro:type:`conn_id` :bro:attr:`&log`
+         The connection's 4-tuple of endpoint addresses/ports.
+
+      cmd: :bro:type:`string` :bro:attr:`&log`
+         The command that was issued
+
+      arg: :bro:type:`string` :bro:attr:`&log`
+         The argument issued to the command
+
+      success: :bro:type:`bool` :bro:attr:`&log` :bro:attr:`&optional`
+         Did the server tell us that the command succeeded?
+
+      rows: :bro:type:`count` :bro:attr:`&log` :bro:attr:`&optional`
+         The number of affected rows, if any
+
+      response: :bro:type:`string` :bro:attr:`&log` :bro:attr:`&optional`
+         Server message, if any
+
+
+Events
+######
+.. bro:id:: MySQL::log_mysql
+
+   :Type: :bro:type:`event` (rec: :bro:type:`MySQL::Info`)
+
+   Event that can be handled to access the MySQL record as it is sent on
+   to the logging framework.
+
+