Reorganize documentation index

Moved examples and use cases into a common subdir so those topics will
get grouped together in the main sidebar/TOC

CHANGES

@@ -1,4 +1,8 @@
 
+2.6-62 | 2019-01-10 15:45:04 -0600
+
+  * Reorganize documentation index (Jon Siwek, Corelight)
+
 2.6-61 | 2019-01-10 13:40:04 -0600
 
   * Add RTD yaml config file (Jon Siwek, Corelight)

VERSION

@@ -1 +1 @@
-2.6-61
+2.6-62

doc/examples/index.rst

@@ -0,0 +1,13 @@
+
+======================
+Examples and Use Cases
+======================
+
+.. toctree::
+   :maxdepth: 2
+
+   logs/index.rst
+   httpmonitor/index.rst
+   ids/index.rst
+   mimestats/index.rst
+   scripting/index.rst

doc/examples/logs/index.rst

@@ -121,7 +121,7 @@ default, including:
 As you can see, some log files are specific to a particular protocol,
 while others aggregate information across different types of activity. 
 For a complete list of log files and a description of its purpose, 
-see :doc:`Log Files <../script-reference/log-files>`.
+see :doc:`Log Files </script-reference/log-files>`.
 
 .. _bro-cut:
 

doc/index.rst

@@ -3,8 +3,8 @@
 Zeek Manual
 ===========
 
-Introduction Section
-====================
+Introduction
+============
 
 .. toctree::
    :maxdepth: 2
@@ -19,22 +19,18 @@ Introduction Section
 
 .. _using-bro:
 
-Using Zeek/Bro Section
+Examples and Use Cases
 ======================
 
 .. toctree::
-   :maxdepth: 2
+   :maxdepth: 3
 
-   logs/index.rst
-   httpmonitor/index.rst
-   broids/index.rst
-   mimestats/index.rst
-   scripting/index.rst
+   examples/index.rst
 
 ..
 
-Reference Section
-=================
+Reference
+=========
 
 .. toctree::
    :maxdepth: 2
@@ -52,5 +48,3 @@ Development
    devel/plugins.rst
 
 * :ref:`General Index <genindex>`
-* :ref:`search`
-